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f , Truncated violin plot comparing baseline CASP1 expression, formatted as log 2 (TPM + 1), between the sensitive and resistant cohorts

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These regions were clustered based on their dynamics relative to the untreated condition and the heatmap ( Figure 1A ) was generated using Java TreeView ( Figure 1 Transcription Factor Binding Motifs Analyses Known and de novo transcription factor binding motifs were identified in the ATAC-seq DAR clusters using the findMotifsGenome tool from Homer using the settings: -size 200 -mask